How “Pure” Water Can Destroy Your Electron Microscope — and What to Use Instead

At Regen Microscopy, we specialize in refurbishing and extending the life of electron microscopes.
And if there’s one “invisible killer” we’ve encountered again and again — it’s improperly managed coolant.

This article breaks down the problem with distilled water, the risks it poses to your microscope, and the protocol we use in-house to protect high-value systems.


Tips: Even when switched off, a microscope with untreated water keeps corroding from the inside.
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Corodded lens

Distilled or deionized water is often seen as a “safe” choice for cooling. However, once exposed to air, it absorbs CO2 and forms carbonic acid — lowering the pH to ~5.5.

This acidic water becomes chemically aggressive, capable of corroding:

  • Copper pipes and fittings
  • Brass seals and flow meters
  • Lens casings and internal mounts
  • Adhesives and O-rings inside the vacuum system

Over time, we’ve seen:

  • Internal leaks
  • Rusted or cracked lenses
  • Cooling failures
  • Short-circuits and electrical damage


Tips: Looks pure, but once exposed to air, it turns acidic and eats away your system.
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Ph Low

We’ve developed a reliable coolant recipe to prevent this kind of damage in every SEM, TEM or FIB system we refurbish:

Regen Coolant Formula (per liter of distilled water):

  • 1.4 g Sodium Bicarbonate (NaHCO₃) → pH buffer
  • 0.25 g Chloramine → biocide against algae and bacteria
  • Always add the buffer first, then the biocide.

Best practices:

  • Use opaque hoses and tanks
  • Pool or automotive pH strips are accurate enough
  • Target pH 7.5 – 9.0
  • Check pH at least every 6 months

Tips: Always mix in a separate container and label the tank with the prep date.
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Recipe

If color changes, deposits appear, or smell is off → replace immediately

If pH is <7.0 or >10.0 → replace immediately

Otherwise, change every 12–18 months for closed-loop systems


Tips: A simple logbook with pH and dates can save a microscope worth hundreds of thousands.
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Log

At Regen, every microscope we refurbish gets a full fluid system check:

  • Flush old fluid
  • Inspect hoses and connectors
  • Fill with our in-house coolant blend
  • Label and document fluid composition + pH

Tips: Take a quick photo after each check — the easiest way to spot changes over time.
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Inspection

  • Use distilled water only with buffer & biocide
  • Add 1.4g sodium bicarbonate + 0.25g chloramine per liter
  • Use opaque hoses and check pH every 6 months
  • Maintain pH between 7.5 and 9.0
  • Replace fluid every 12–18 months or sooner if signs of degradation

Tips: Print the checklist as a poster near the water chiller.
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Checklist
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